The current AMIs were created from instances with 4 cores and 16 GiB of memory. To launch the AMI you’ll step through several screens:Ĭhoose version of Bioconductor you want to run. Once you have created an AWS account, you can launch one (this will avoid conflicts with other people who share your AWS account, or possibly your own account on another machine).įor example, if your name is Bob and your personal computer is named “mylaptop”, your key pair name could be “bioconductor-bob-mylaptop”.
We suggest that the name be a combination of “bioconductor”, your first name, and your machine name Link in the lower left-hand corner of the page. If you also want to connect to it with SSH, create a keypair as follows: Creating a Key Pair To connect to your AMI with a web browser. That’s all that is required if you want to use RStudio Server This will require that you provide creditĬard information however, you will only be charged for services used. Sign up for AWS and then click here to sign up for the EC2 service. The AMI comes pre-loaded with the latest release version of R and theįirst you will need an Amazon Web Services (AWS) account if you do not already have one. The AMI contains many packages which can be very.You want to run R in your web browser (using RStudio Server).
You have a parallelizable task and would like to run it (either on multiple CPUs on a single machine, or in a cluster of many machines).You have a long-running task and you don’t want it to tie up the CPU on your own machine.
You do not want to install Bioconductor on your own machine.We have developed an Amazon Machine Image (AMI) that is optimized for running Bioconductor in the Amazon Elastic Compute Cloud Moving data to and from your Bioconductor AMI instance.Provisioning a virtual or physical machine for use with Bioconductor.Creating a custom version of the Bioconductor AMI.Using BiocParallel with Sun Grid Engine.Parallelization using the parallel package.Scenarios for using your Bioconductor instance.Connecting to your AMI using HTTP and Rstudio.Other related resources are Docker Images and the AnVIL project Contents Note: Bioconductor preconfigured AMI’s are deprecated and no longer being Obtain an Amazon Web Services account and
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